Transforming Plain Text FilesĪlthough different GenePattern modules require different file formats, all of the files are plain text files.
Check their blog for newly added converters. Their Convert file formats page lists supported file conversions, descriptions of file types, and an email to request new file format converters. Several video tutorials are also available: This section provides general information to help you create properly formatted files for GenePattern. For more information about a particular file format, select it from the list at the right. Often, one or more of these parameters are input files, which must have a particular format for example, you might need to supply a gct or res file. When you run an analysis module, visualization module, or pipeline, GenePattern displays the parameters for the selected modules.